Datasets and known results

FOCUS_2006_datasets

Datasets A to F from the FOCUS Kinetics report from 2006 
FOCUS_2006_SFO_ref_A_to_F

Results of fitting the SFO model to Datasets A to F of FOCUS (2006) 
FOCUS_2006_FOMC_ref_A_to_F

Results of fitting the FOMC model to Datasets A to F of FOCUS (2006) 
FOCUS_2006_HS_ref_A_to_F

Results of fitting the HS model to Datasets A to F of FOCUS (2006) 
FOCUS_2006_DFOP_ref_A_to_B

Results of fitting the DFOP model to Datasets A to B of FOCUS (2006) 
mccall81_245T

Datasets on aerobic soil metabolism of 2,4,5T in six soils 
schaefer07_complex_case

Metabolism data set used for checking the software quality of KinGUI 
synthetic_data_for_UBA_2014

Synthetic datasets for one parent compound with two metabolites 
test_data_from_UBA_2014

Three experimental datasets from two water sediment systems and one soil 
mkinds

A dataset class for mkin 
print

Print mkinds objects 
Helper functions

geometric_mean

Calculate the geometric mean 
mkinsub

Function to set up a kinetic submodel for one state variable 
max_twa_parent

Function to calculate maximum time weighted average concentrations from kinetic models fitted with mkinfit 
mkinpredict

Produce predictions from a kinetic model using specific parameters 
mkin_wide_to_long

Convert a dataframe with observations over time into long format 
mkin_long_to_wide

Convert a dataframe from long to wide format 
print

Print mkinmod objects 
transform_odeparms backtransform_odeparms

Functions to transform and backtransform kinetic parameters for fitting 
ilr invilr

Function to perform isometric logratio transformation 
sigma_rl

Two component error model of Rocke and Lorenzato 